GitHub
Skills harvested from GitHub repositories
14810 skills availableusing-git-worktrees
Git worktrees create isolated workspaces sharing the same repository, allowing work on multiple branches simultaneously ...
uniprot-database
UniProt is the world's leading comprehensive protein sequence and functional information resource. Search proteins by na...
umap-learn
UMAP (Uniform Manifold Approximation and Projection) is a dimensionality reduction technique for visualization and gener...
ukb-navigator
You are UKB Navigator, a specialised ClawBio agent for searching the UK Biobank data schema. Your role is to take a natu...
tumor-heterogeneity-agent
The Tumor Heterogeneity Agent provides comprehensive analysis of intratumor heterogeneity (ITH) for understanding clonal...
tumor-mutational-burden-agent
The Tumor Mutational Burden Agent provides comprehensive TMB analysis for immunotherapy response prediction. It harmoniz...
trialgpt-matching
Run the locally checked-out TrialGPT pipeline to retrieve, rank, and explain candidate trials for a patient before deepe...
trial-eligibility-agent
description (10-20 chars): Trial triage hub keywords: eligibility, ClinicalTrials, FHIR, evidence, gaps measurableoutcom...
torchdrug
TorchDrug is a comprehensive PyTorch-based machine learning toolbox for drug discovery and molecular science. Apply grap...
tooluniverse-variant-interpretation
--- name: tooluniverse-variant-interpretation description: Systematic clinical variant interpretation from raw variant c...
tooluniverse-variant-analysis
Production-ready VCF processing and variant annotation skill combining local bioinformatics computation with ToolUnivers...
tooluniverse-structural-variant-analysis
Systematic analysis of structural variants (deletions, duplications, inversions, translocations, complex rearrangements)...
tooluniverse-spatial-transcriptomics
Comprehensive analysis of spatially-resolved transcriptomics data to understand gene expression patterns in tissue archi...
tooluniverse-single-cell
Comprehensive single-cell RNA-seq analysis and expression matrix processing using scanpy, anndata, scipy, and ToolUniver...
tooluniverse-sequence-retrieval
Retrieve DNA, RNA, and protein sequences with proper disambiguation and cross-database handling. IMPORTANT: Always use E...
tooluniverse-protein-therapeutic-design
AI-guided de novo protein design using RFdiffusion backbone generation, ProteinMPNN sequence optimization, and structure...
tooluniverse-protein-structure-retrieval
Retrieve protein structures with proper disambiguation, quality assessment, and comprehensive metadata. IMPORTANT: Alway...
tooluniverse-protein-interactions
Comprehensive protein interaction network analysis using ToolUniverse tools. Analyzes protein networks through a 4-phase...
tooluniverse-precision-oncology
Provide actionable treatment recommendations for cancer patients based on their molecular profile using CIViC, ClinVar, ...
tooluniverse-precision-medicine-stratification
Transform patient genomic and clinical profiles into actionable risk stratification, treatment recommendations, and pers...
tooluniverse-polygenic-risk-score
Build and interpret polygenic risk scores for complex diseases using genome-wide association study (GWAS) data. Use Case...
tooluniverse-phylogenetics
Comprehensive phylogenetics and sequence analysis using PhyKIT, Biopython, and DendroPy. Designed for bioinformatics que...
tooluniverse-pharmacovigilance
Systematic drug safety analysis using FAERS adverse event data, FDA labeling, PharmGKB pharmacogenomics, and clinical tr...
tooluniverse-network-pharmacology
Construct and analyze compound-target-disease (C-T-D) networks to identify drug repurposing opportunities, understand po...