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Skills harvested from GitHub repositories
14810 skills availablecell-free-expression
| System | Best For | Yield | PTMs | Disulfides | Cost | |--------|----------|-------|------|------------|------| | E. c...
cancer-metabolism-agent
The Cancer Metabolism Agent analyzes tumor metabolic reprogramming to identify vulnerabilities for therapeutic targeting...
bulk-trajblend-interpolation
Invoke this skill when users need to bridge gaps in single-cell developmental trajectories using matched bulk RNA-seq. I...
bulk-deg-analysis
Follow this skill to run the end-to-end differential expression (DEG) workflow showcased in tdeg.ipynb. It assumes the u...
bulk-combat-correction
Apply this skill when a user has multiple bulk expression matrices measured across different batches and needs to harmon...
brenda-database
BRENDA (BRaunschweig ENzyme DAtabase) is the world's most comprehensive enzyme information system, containing detailed e...
brainstorming
Help turn ideas into fully formed designs and specs through natural collaborative dialogue. Start by understanding the c...
boltz
| Requirement | Minimum | Recommended | |-------------|---------|-------------| | Python | 3.10+ | 3.11 | | CUDA | 12.0+...
bioservices
BioServices is a Python package providing programmatic access to approximately 40 bioinformatics web services and databa...
biopython
Biopython is a comprehensive set of freely available Python tools for biological computation. It provides functionality ...
biomedical-data-analysis
Run the cross-language data analysis workflows (Python, R, SQL, Tableau/Power BI) described in this module to clean, ana...
biomni-research-agent
A general-purpose biomedical AI agent capable of executing complex research workflows using over 150 tools and databases...
biomcp-server
Deploy and operate the BioMCP server so MCP-compatible clients (Claude Desktop, LobeChat, etc.) can query biomedical dat...
biomaster-workflows
Orchestrate BioMaster’s multi-agent pipelines (RNA-seq, ChIP-seq, single-cell, Hi-C) using the provided configs and repo...
bio-write-sequences
Reference examples tested with: BioPython 1.83+, pysam 0.22+, samtools 1.19+ Before using code patterns, verify installe...
bio-workflows-tcr-pipeline
FASTQ → MiXCR align → Assemble → Export → VDJtools diversity → Visualization mixcr align -s hsa -p rna-seq \ R1.fastq.gz...
bio-workflows-spatial-pipeline
Complete workflow for analyzing Visium, Xenium, or other spatial transcriptomics data. Spatial data (Space Ranger output...
bio-workflows-somatic-variant-pipeline
Complete workflow for calling somatic mutations from tumor-normal paired samples. Tumor BAM + Normal BAM ├── Preprocessi...
bio-workflows-riboseq-pipeline
FASTQ → Preprocessing → rRNA removal → Alignment → P-site → TE → ORF calling cutadapt -a CTGTAGGCACCATCAAT \ --minimum-l...
bio-workflows-proteomics-pipeline
Raw MS Data (mzML) ──> MaxQuant/DIA-NN ──> proteinGroups.txt ┌────────────────────────────────────────────┐ │ ...
bio-workflows-outbreak-pipeline
Complete workflow for genomic epidemiology: from pathogen isolates to transmission networks and outbreak characterizatio...
bio-workflows-multiome-pipeline
Complete workflow for 10X Multiome (joint scRNA + scATAC) analysis using Seurat and Signac. 10X Multiome data [1. Load D...
bio-workflows-metagenomics-pipeline
Complete workflow from metagenomic FASTQ to taxonomic and functional profiles. FASTQ files [1. QC & Host Removal] --> fa...
bio-workflows-metabolomics-pipeline
Raw MS Data (mzML/mzXML) ──> Peak Detection ──> Feature Matrix ┌─────────────────────────────────────────────┐ │ ...