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14810 skills availablebio-single-cell-splicing
Reference examples tested with: anndata 0.10+, numpy 1.26+, pandas 2.2+, scanpy 1.10+ Before using code patterns, verify...
bio-single-cell-lineage-tracing
Reference examples tested with: Cassiopeia 2.0+, matplotlib 3.8+, numpy 1.26+, scanpy 1.10+ Before using code patterns, ...
pydeseq2
PyDESeq2 is a Python implementation of DESeq2 for differential expression analysis with bulk RNA-seq data. Design and ex...
anndata
AnnData is a Python package for handling annotated data matrices, storing experimental measurements (X) alongside observ...
MAGE
Run the MAGE antibody generation workflow to propose antigen-conditioned antibody sequences for downstream structural va...
bio-metabolomics-msdial-preprocessing
Reference examples tested with: numpy 1.26+, pandas 2.2+, scanpy 1.10+, xcms 4.0+ Before using code patterns, verify ins...
bio-phasing-imputation-genotype-imputation
java -jar beagle.jar \ gt=study.vcf.gz \ ref=referencepanel.vcf.gz \ map=geneticmap.txt \ out=imputed java -Xmx32g -jar ...
torch_geometric
PyTorch Geometric is a library built on PyTorch for developing and training Graph Neural Networks (GNNs). Apply this ski...
scientific-schematics
Scientific schematics and diagrams transform complex concepts into clear visual representations for publication. This sk...
bio-restriction-mapping
from Bio import SeqIO from Bio.Restriction import EcoRI, BamHI, HindIII, RestrictionBatch, Analysis record = SeqIO.read(...
ligandmpnn
| Requirement | Minimum | Recommended | |-------------|---------|-------------| | Python | 3.8+ | 3.10 | | CUDA | 11.0+ ...
bio-vcf-basics
Reference examples tested with: bcftools 1.19+, numpy 1.26+ Before using code patterns, verify installed versions match....
bio-clinical-databases-variant-prioritization
Reference examples tested with: pandas 2.2+ Before using code patterns, verify installed versions match. If versions dif...
hmdb-database
The Human Metabolome Database (HMDB) is a comprehensive, freely available resource containing detailed information about...
post-processing
Analyze and extract meaningful information from simulation output data. Transform raw simulation output into actionable ...
bio-epitranscriptomics-m6a-differential
library(exomePeak2) design <- data.frame( condition = factor(c('ctrl', 'ctrl', 'treat', 'treat')) result <- exomePeak2( ...
bio-workflows-neoantigen-pipeline
Complete workflow from somatic variants to ranked neoantigen vaccine candidates for personalized cancer immunotherapy. S...
bio-metagenomics-amr-detection
Reference examples tested with: AMRFinderPlus 3.12+, pandas 2.2+ Before using code patterns, verify installed versions m...
bio-genome-intervals-interval-arithmetic
Core set operations on genomic intervals using bedtools (CLI) and pybedtools (Python). bedtools intersect -a peaks.bed -...
data-visualization-expert
A dedicated skill for transforming raw data (CSV, JSON, Excel) into compelling visual narratives. Specializes in statist...
pan-cancer-multiomics-agent
The Pan-Cancer Multi-Omics Agent integrates multi-omics data across cancer types to identify shared oncogenic drivers, d...
tooluniverse-target-research
Gather complete target intelligence by exploring 9 parallel research paths. Supports targets identified by gene symbol, ...
bio-pdb-geometric-analysis
Reference examples tested with: BioPython 1.83+, numpy 1.26+ Before using code patterns, verify installed versions match...
bio-epidemiological-genomics-variant-surveillance
Reference examples tested with: Nextclade 3.3+, ggplot2 3.5+, pandas 2.2+ Before using code patterns, verify installed v...