GitHub
Skills harvested from GitHub repositories
14810 skills availablebio-clip-seq-clip-motif-analysis
bedtools getfasta -fi genome.fa -bed peaks.bed -fo peaks.fa findMotifs.pl peaks.fa fasta outputdir \ -len 6,7,8 \ -rna m...
liquid-biopsy-analytics-agent
The Liquid Biopsy Analytics Agent provides comprehensive AI-driven analysis of blood-based cancer biomarkers. It integra...
bio-splicing-qc
Reference examples tested with: matplotlib 3.8+, pandas 2.2+, pysam 0.22+ Before using code patterns, verify installed v...
bio-metabolomics-pathway-mapping
Reference examples tested with: ReactomePA 1.46+, clusterProfiler 4.10+ Before using code patterns, verify installed ver...
bio-tcr-bcr-analysis-mixcr-analysis
Reference examples tested with: MiXCR 4.6+, pandas 2.2+ Before using code patterns, verify installed versions match. If ...
bio-virtual-screening
Reference examples tested with: AutoDock Vina 1.2+, RDKit 2024.03+, pandas 2.2+ Before using code patterns, verify insta...
bio-genome-engineering-hdr-template-design
Reference examples tested with: BioPython 1.83+, primer3-py 2.0+ Before using code patterns, verify installed versions m...
drugbank-database
DrugBank is a comprehensive bioinformatics and cheminformatics database containing detailed information on drugs and dru...
variant-normalization
Left-align indels and split multiallelic sites using bcftools norm. The same variant can be represented multiple ways: c...
bio-tcr-bcr-analysis-scirpy-analysis
Reference examples tested with: MiXCR 4.6+, VDJtools 1.2.1+, scanpy 1.10+ Before using code patterns, verify installed v...
tooluniverse-drug-research
Comprehensive drug investigation using 50+ ToolUniverse tools across chemical databases, clinical trials, adverse events...
bio-motif-search
Find patterns and motifs in biological sequences using Biopython and regex. from Bio.Seq import Seq from Bio import moti...
virtual-lab-agent
The Virtual Lab Agent orchestrates AI-powered virtual scientific research teams consisting of specialized agents (Princi...
bio-spatial-transcriptomics-spatial-domains
Reference examples tested with: matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, scikit-learn 1.4+, scipy 1.12+,...
long-read-sequencing-agent
The Long-Read Sequencing Agent provides comprehensive AI-driven analysis of long-read sequencing data from PacBio (HiFi)...
bio-molecular-descriptors
Reference examples tested with: RDKit 2024.03+, numpy 1.26+, pandas 2.2+ Before using code patterns, verify installed ve...
scvelo
scVelo is the leading Python package for RNA velocity analysis in single-cell RNA-seq data. It infers cell state transit...
hypogenic
Hypogenic provides automated hypothesis generation and testing using large language models to accelerate scientific disc...
bio-genome-assembly-short-read-assembly
Assemble genomes from Illumina paired-end or single-end reads using SPAdes. SPAdes (St. Petersburg genome Assembler) use...
grief-companion
A compassionate guide for those navigating loss. This skill provides grief education, memorial creation support, practic...
prior-auth-review-skill
This skill automates the payer review process for prior authorization (PA) requests. It processes clinical documentation...
scikit-survival
scikit-survival is a Python library for survival analysis built on top of scikit-learn. It provides specialized tools fo...
bio-read-qc-quality-reports
Reference examples tested with: pandas 2.2+ Before using code patterns, verify installed versions match. If versions dif...
spatial-data-io
Load and work with spatial transcriptomics data from various platforms. import squidpy as sq import scanpy as sc import ...