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14810 skills availablepatents-search
Search the complete global patent database using natural language queries powered by Valyu's semantic search API. No API...
scientific-critical-thinking
Critical thinking is a systematic process for evaluating scientific rigor. Assess methodology, experimental design, stat...
recovery-community-moderator
Trauma-informed AI moderator for addiction recovery communities. Applies harm reduction principles, honors 12-step tradi...
open-notebook
Open Notebook is an open-source, self-hosted alternative to Google's NotebookLM that enables researchers to organize mat...
protein-structure-prediction
The Protein Structure Prediction Skill provides an interface to state-of-the-art folding models. It takes an amino acid ...
bio-workflows-methylation-pipeline
Complete workflow from bisulfite sequencing FASTQ to differentially methylated regions. FASTQ files [1. QC & Trimming] -...
scientific-problem-selection
A conversational framework for systematic scientific problem selection based on Fischbach & Walsh's "Problem choice and ...
executing-plans
Load plan, review critically, execute tasks in batches, report for review between batches. Core principle: Batch executi...
bio-data-visualization-volcano-customization
library(ggplot2) library(ggrepel) df$significance <- casewhen( df$padj < 0.05 & df$log2FoldChange > 1 'Up', df$padj < 0...
networkx
NetworkX is a Python package for creating, manipulating, and analyzing complex networks and graphs. Use this skill when ...
statsmodels
Statsmodels is Python's premier library for statistical modeling, providing tools for estimation, inference, and diagnos...
claw-metagenomics
Comprehensive shotgun metagenomics analysis combining taxonomic classification, antimicrobial resistance gene detection,...
bio-workflows-cnv-pipeline
Complete workflow for detecting copy number variants from exome or targeted sequencing data. BAM files (tumor/normal or ...
bindingdb-database
BindingDB (https://www.bindingdb.org/) is the primary public database of measured drug-protein binding affinities. It co...
cosmic-database
COSMIC (Catalogue of Somatic Mutations in Cancer) is the world's largest and most comprehensive database for exploring s...
bio-comparative-genomics-positive-selection
''' dN/dS (omega, ω) interpretation: ω < 1: Purifying (negative) selection - deleterious mutations removed ω = 1: Neutra...
cellagent-annotation
Use CellTypeAgent to interpret marker genes, annotate scRNA-seq clusters, and coordinate multi-agent workflows for downs...
bio-read-qc-contamination-screening
Reference examples tested with: BBTools 39.0+, Bowtie2 2.5.3+, FastQ Screen 0.15+, FastQC 0.12+, MultiQC 1.21+ Before us...
knowledge-synthesis
The last mile of enterprise search. Takes raw results from multiple sources and produces a coherent, trustworthy answer....
clinical-decision-support
Generate professional clinical decision support (CDS) documents for pharmaceutical companies, clinical researchers, and ...
tcm-constitution-analyzer
分析中医体质数据,识别体质类型,评估体质特征,并提供个性化养生改善建议。 基于《中医体质分类与判定》标准进行体质辨识。 评估维度: 9种体质类型评分(平和质、气虚质、阳虚质、阴虚质、痰湿质、湿热质、血瘀质、气郁质、特禀质) 主体质判定 兼夹...
bio-flow-cytometry-compensation-transformation
Reference examples tested with: flowCore 2.14+, scanpy 1.10+ Before using code patterns, verify installed versions match...
ginkgo-cloud-lab
Ginkgo Cloud Lab (https://cloud.ginkgo.bio) provides remote access to Ginkgo Bioworks' autonomous lab infrastructure. Pr...
bio-longread-alignment
Reference examples tested with: minimap2 2.26+, samtools 1.19+ Before using code patterns, verify installed versions mat...