bio-epidemiological-genomics-pathogen-typing

Reference examples tested with: mlst 2.23+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, scipy 1.12+ Before using code patter...

github

scfoundation-model-agent

The scFoundation Model Agent provides a unified interface to leverage state-of-the-art single-cell foundation models for...

github

profile-report

You are Profile Report, a specialised ClawBio agent for generating unified personal genomic profile reports. Your role i...

github

fhir-developer-skill

| Code | When to Use | |------|-------------| | 200 OK | Successful read, update, or search | | 201 Created | Successful...

github

literature-search

Search across all major scientific literature databases (PubMed, arXiv, bioRxiv, medRxiv) simultaneously using natural l...

github

bio-compressed-files

Reference examples tested with: BioPython 1.83+, samtools 1.19+ Before using code patterns, verify installed versions ma...

github

prs-net-deep-learning-agent

The PRS-Net Deep Learning Agent implements interpretable geometric deep learning for polygenic risk score prediction. PR...

github

bio-alignment-msa-parsing

Reference examples tested with: BioPython 1.83+ Before using code patterns, verify installed versions match. If versions...

github

regulatory-drafting

This skill implements the Regulatory Drafting workflow using Anthropic's Claude. python3 Skills/AnthropicHealthStack/Reg...

github

bio-genome-intervals-bigwig-tracks

BigWig is an indexed binary format for continuous genomic data. Efficient for genome browsers and programmatic access. |...

github

bio-similarity-searching

Reference examples tested with: RDKit 2024.03+ Before using code patterns, verify installed versions match. If versions ...

github

pyhealth

PyHealth is a comprehensive Python library for healthcare AI that provides specialized tools, models, and datasets for c...

github

bulk-to-single-deconvolution

Use this skill when a user wants to reconstruct single-cell profiles from bulk RNA-seq together with a matched reference...

github

tooluniverse-drug-repurposing

Systematically identify and evaluate drug repurposing candidates using multiple computational strategies. IMPORTANT: Alw...

github

bio-workflows-imc-pipeline

Raw MCD/TIFF Files ──> Image Processing ──> Cell Masks ┌─────────────────────────────────────────────┐ │ im...

github

interpro-database

InterPro (https://www.ebi.ac.uk/interpro/) is a comprehensive resource for protein family and domain classification main...

github

polars

Polars is a lightning-fast DataFrame library for Python and Rust built on Apache Arrow. Work with Polars' expression-bas...

github

fastq-analysis

OmicVerse provides a complete FASTQ-to-count-matrix pipeline via the ov.alignment module. This skill covers: SRA data ac...

github

occupational-health-analyzer

职业健康分析技能提供全面的职业健康数据分析功能,帮助用户追踪工作相关健康问题、识别职业健康风险、评估工作环境人机工程水平和优化职业健康。 主要功能模块: 职业健康风险评估 - 久坐、视屏终端、倒班工作、重复性劳损、工作压力等多维度风险评估 ...

github

dispatching-parallel-agents

When you have multiple unrelated failures (different test files, different subsystems, different bugs), investigating th...

github

bio-data-visualization-genome-browser-tracks

[x-axis] where = top [bigwigcoverage] file = sample.bw title = Coverage height = 3 color = #4DBBD5 minvalue = 0 maxvalue...

github

scientific-writing

This is the core skill for the deep research and writing tool—combining AI-driven deep research with well-formatted writ...

github

bio-fastq-quality

Reference examples tested with: BioPython 1.83+ Before using code patterns, verify installed versions match. If versions...

github

bio-ribo-seq-translation-efficiency

Reference examples tested with: DESeq2 1.42+, numpy 1.26+, pandas 2.2+ Before using code patterns, verify installed vers...

github