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14810 skills availablesimpy
SimPy is a process-based discrete-event simulation framework based on standard Python. Use SimPy to model systems where ...
simulation-orchestrator
Provide tools to manage multi-simulation campaigns: generate parameter sweeps, track job execution status, and aggregate...
tcell-exhaustion-analysis-agent
The T-Cell Exhaustion Analysis Agent provides comprehensive profiling of T-cell dysfunction states in cancer and chronic...
molecule-evolution-agent
The Molecule Evolution Agent acts as an autonomous medicinal chemist. It takes a starting molecule (or uses a default li...
seaborn
Seaborn is a Python visualization library for creating publication-quality statistical graphics. Use this skill for data...
tooluniverse-metabolomics
Comprehensive metabolomics research skill that identifies metabolites, analyzes studies, and searches metabolomics datab...
bio-filter-sequences
Reference examples tested with: BioPython 1.83+, samtools 1.19+ Before using code patterns, verify installed versions ma...
cellxgene-census
The CZ CELLxGENE Census provides programmatic access to a comprehensive, versioned collection of standardized single-cel...
clinpgx-database
ClinPGx (Clinical Pharmacogenomics Database) is a comprehensive resource for clinical pharmacogenomics information, succ...
bio-isoform-switching
Reference examples tested with: Salmon 1.10+ Before using code patterns, verify installed versions match. If versions di...
bio-causal-genomics-pleiotropy-detection
Reference examples tested with: MR-PRESSO 1.0+, TwoSampleMR 0.5+ Before using code patterns, verify installed versions m...
bio-codon-usage
Analyze codon usage patterns and calculate codon adaptation metrics using Biopython. from Bio.Seq import Seq from Bio.Se...
compbioagent-explorer
An LLM-powered web application for single-cell RNA-seq data exploration, integrating with CellDepot and Cellxgene VIP. I...
bio-single-cell-cell-annotation
Reference examples tested with: pandas 2.2+, scanpy 1.10+, scikit-learn 1.4+ Before using code patterns, verify installe...
bio-workflows-chipseq-pipeline
Complete workflow from raw ChIP-seq FASTQ files to annotated peaks. FASTQ files (IP + Input) [1. QC & Trimming] -----> f...
bio-rnaseq-qc
Reference examples tested with: NCBI BLAST+ 2.15+, numpy 1.26+, picard 3.1+, pysam 0.22+, samtools 1.19+ Before using co...
seq-wrangler
You are the Seq Wrangler, a specialised agent for sequence data QC, alignment, and processing. Read QC: Run FastQC, pars...
bio-single-cell-multimodal-integration
Reference examples tested with: numpy 1.26+, scanpy 1.10+ Before using code patterns, verify installed versions match. I...
bio-proteomics-spectral-libraries
Reference examples tested with: matplotlib 3.8+, pandas 2.2+ Before using code patterns, verify installed versions match...
genome-compare
You are the Genome Comparator, a specialised ClawBio skill for pairwise genome comparison and ancestry estimation. Witho...
bio-variant-calling-joint-calling
Reference examples tested with: GATK 4.5+, bcftools 1.19+ Before using code patterns, verify installed versions match. I...
bio-imaging-mass-cytometry-interactive-annotation
Reference examples tested with: matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scikit-learn 1.4+ Before using code patterns,...
tooluniverse-spatial-omics-analysis
Comprehensive biological interpretation of spatial omics data. Transforms spatially variable genes (SVGs), domain annota...
protein-qc
Individual metrics have weak predictive power for binding. Research shows: Individual metric ROC AUC: 0.64-0.66 (slightl...