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14810 skills availablescientific-slides
Scientific presentations are a critical medium for communicating research, sharing findings, and engaging with academic ...
bio-long-read-sequencing-clair3-variants
Reference examples tested with: DeepVariant 1.6+, Entrez Direct 21.0+, bcftools 1.19+, minimap2 2.26+ Before using code ...
molecular-glue-discovery-agent
The Molecular Glue Discovery Agent enables AI-driven discovery of molecular glue degraders that induce protein-protein i...
multi-ancestry-prs-agent
The Multi-Ancestry PRS Agent provides AI-optimized polygenic risk score calculation designed to work across diverse ance...
scanpy
Scanpy is a scalable Python toolkit for analyzing single-cell RNA-seq data, built on AnnData. Apply this skill for compl...
bio-paired-end-fastq
Reference examples tested with: BioPython 1.83+ Before using code patterns, verify installed versions match. If versions...
bio-workflows-rnaseq-to-de
Complete pipeline from raw FASTQ files to differential expression results. FASTQ files [1. QC & Trimming] -----> fastp [...
tooluniverse-rnaseq-deseq2
Comprehensive differential expression analysis of RNA-seq count data using PyDESeq2, with integrated enrichment analysis...
bio-immunoinformatics-epitope-prediction
Reference examples tested with: pandas 2.2+ Before using code patterns, verify installed versions match. If versions dif...
bio-workflows-longread-sv-pipeline
Complete workflow for detecting structural variants from ONT or PacBio long-read data. Long reads (ONT/PacBio) [1. QC] -...
bio-de-results
Reference examples tested with: DESeq2 1.42+, edgeR 4.0+ Before using code patterns, verify installed versions match. If...
bio-genome-intervals-coverage-analysis
Calculate coverage and depth across genomic regions using bedtools and pybedtools. bedtools genomecov -ibam alignments.b...
bio-tumor-fraction-estimation
Reference examples tested with: CNVkit 0.9+, ichorCNA 0.5+, pandas 2.2+ Before using code patterns, verify installed ver...
molfeat
Molfeat is a comprehensive Python library for molecular featurization that unifies 100+ pre-trained embeddings and hand-...
bio-genome-assembly-assembly-qc
Evaluate genome assembly quality with contiguity metrics (QUAST) and gene completeness (BUSCO). | Metric | Good Assembly...
chemcrow-drug-discovery
ChemCrow is an open-source package for the accurate integration of Large Language Models (LLMs) with chemistry tools. It...
bio-differential-expression-batch-correction
Reference examples tested with: DESeq2 1.42+, ggplot2 3.5+, limma 3.58+, scanpy 1.10+ Before using code patterns, verify...
spatial-tutorials
Use this skill to navigate the spatial analysis tutorials located under Tutorials-space. The notebooks span preprocessin...
gget
gget is a command-line bioinformatics tool and Python package providing unified access to 20+ genomic databases and anal...
bio-variant-annotation
Reference examples tested with: bcftools 1.19+ Before using code patterns, verify installed versions match. If versions ...
travel-health-analyzer
本技能提供的所有健康建议和信息仅供参考,不能替代专业医疗建议。 ⚠️ 所有建议必须由专业医生审核 ⚠️ 疫苗接种和用药方案必须由医生制定 ⚠️ 不提供具体的医疗处方或诊断 ⚠️ 健康风险数据来源于WHO/CDC,可能存在滞后性 ⚠️ 紧急情...
bio-metabolomics-metabolite-annotation
Reference examples tested with: pandas 2.2+, xcms 4.0+ Before using code patterns, verify installed versions match. If v...
bio-workflows-clip-pipeline
FASTQ → QC → UMI extract → Trim adapters → Align → Filter → Dedup → Peak call → Annotate → Motifs | Method | UMI | Cross...
pubmed-search
Search NCBI PubMed for scientific literature using BioPython's Entrez module. User asks to find papers on a topic User w...