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Skills harvested from GitHub repositories
14810 skills availableprior-auth-coworker
This skill acts as an automated utilization management reviewer. It takes unstructured clinical notes and a procedure co...
SpatialAgent
SpatialAgent focuses on the biological interpretation of spatial transcriptomics data, specifically aiming to propose me...
bio-hi-c-analysis-hic-visualization
Reference examples tested with: cooler 0.9+, cooltools 0.6+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+ Before using code...
bio-single-cell-perturb-seq
Reference examples tested with: MAGeCK 0.5+, pandas 2.2+, pertpy 0.7+, scanpy 1.10+ Before using code patterns, verify i...
spatial-neighbors
Build spatial neighbor graphs for connectivity-based analyses. import squidpy as sq import scanpy as sc import numpy as ...
bio-crispr-screens-jacks-analysis
Reference examples tested with: MAGeCK 0.5+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scipy 1.12+ Before using code pa...
protocolsio-integration
Protocols.io is a comprehensive platform for developing, sharing, and managing scientific protocols. This skill provides...
gsea-enrichment
This skill covers gene set enrichment analysis (GSEA) and pathway enrichment workflows in OmicVerse. It provides critica...
bio-entrez-search
Search NCBI databases using Biopython's Entrez module (ESearch, EInfo, EGQuery utilities). from Bio import Entrez Entrez...
bio-crispr-screens-batch-correction
Reference examples tested with: DESeq2 1.42+, MAGeCK 0.5+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scikit-learn 1.4+,...
data-viz-plots
This skill enables you to create professional scientific visualizations including scatter plots, line charts, heatmaps, ...
coagulation-thrombosis-agent
The Coagulation and Thrombosis Agent provides AI-driven analysis of hemostatic disorders, thrombosis risk assessment, an...
scientific-brainstorming
Scientific brainstorming is a conversational process for generating novel research ideas. Act as a research ideation par...
openalex-database
OpenAlex is a comprehensive open catalog of 240M+ scholarly works, authors, institutions, topics, sources, publishers, a...
performance-profiling
Provide tools to analyze simulation performance, identify bottlenecks, and recommend optimization strategies for computa...
bio-read-qc-fastp-workflow
Reference examples tested with: FastQC 0.12+, fastp 0.23+ Before using code patterns, verify installed versions match. I...
drug-discovery-search
Search across all major drug discovery databases (ChEMBL, DrugBank, FDA drug labels, Open Targets) simultaneously using ...
scientific-manuscript
Concise (<15 words for Nature, <20 for Blood) Include key finding and system/disease Avoid jargon and abbreviations Back...
depmap
The Cancer Dependency Map (DepMap) project, run by the Broad Institute, systematically characterizes genetic dependencie...
fitness-analyzer
分析运动数据，识别运动模式，评估健身进展，并提供个性化训练建议。 分析运动量、频率、强度的变化趋势，识别改善或需要调整的方面。 分析维度： 运动量趋势（时长、距离、卡路里） 运动频率趋势（每周运动天数） 强度分布变化（低/中/高强度占比） ...
bio-single-cell-preprocessing
Reference examples tested with: ggplot2 3.5+, matplotlib 3.8+, numpy 1.26+, scanpy 1.10+ Before using code patterns, ver...
bio-clinical-databases-somatic-signatures
Reference examples tested with: MutationalPatterns 3.12+, SigProfilerExtractor 1.1+, numpy 1.26+ Before using code patte...
emergency-card
生成紧急情况下快速访问的医疗信息摘要，用于急救或就医。 从用户的健康数据中提取最关键的信息： 严重过敏：优先提取4级（过敏性休克）和3级过敏 当前用药：活跃药物的名称、剂量、频率 急症情况：需要紧急处理的医疗状况 植入物：心脏起搏器、支架等...
bio-variant-calling-clinical-interpretation
Reference examples tested with: Entrez Direct 21.0+, bcftools 1.19+ Before using code patterns, verify installed version...