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14810 skills availablemyeloma-mrd-agent
The Myeloma MRD Agent provides comprehensive AI-driven minimal residual disease assessment for multiple myeloma. It inte...
boltzgen
| Requirement | Minimum | Recommended | |-------------|---------|-------------| | Python | 3.10+ | 3.11 | | CUDA | 12.0+...
bulk-deseq2-analysis
Use this skill when a user wants to reproduce the DESeq2 workflow showcased in tdeseq2.ipynb. It covers loading raw feat...
biokernel
The BioKernel is the central orchestration layer of the Biomedical OS, managing context, routing tasks to specialized ag...
clinvar-database
ClinVar is NCBI's freely accessible archive of reports on relationships between human genetic variants and phenotypes, w...
bio-rna-quantification-tximport-workflow
Import transcript-level estimates from Salmon, kallisto, or other quantifiers into R for gene-level differential express...
bio-phasing-imputation-reference-panels
BASEURL="http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/datacollections/1000G2504highcoverage/working/202010283202phased" for...
chatehr-clinician-assistant
AI software for clinicians to interact with patient medical records via natural language queries and automatic chart sum...
bio-duplicate-handling
Mark and remove PCR/optical duplicates using samtools. PCR duplicates are identical copies of the same original molecule...
ontology-mapper
Translate real-world materials science descriptions into standardized ontology annotations. Given terms like "FCC copper...
biologist-analyst
Analyze living systems, biological phenomena, and life sciences questions through the disciplinary lens of biology, appl...
universal-single-cell-annotator
This skill wraps multiple cell type annotation strategies into a single Python class. It allows agents to flexibly choos...
bio-read-qc-adapter-trimming
Reference examples tested with: FastQC 0.12+, Trimmomatic 0.39+, cutadapt 4.4+, fastp 0.23+ Before using code patterns, ...
tcga-preprocessing
Follow this skill to recreate the preprocessing routine from ttcga.ipynb. It automates loading TCGA downloads, generatin...
bio-chipseq-visualization
Reference examples tested with: GenomicRanges 1.54+, deepTools 3.5+ Before using code patterns, verify installed version...
markitdown
MarkItDown is a Python tool developed by Microsoft for converting various file formats to Markdown. It's particularly us...
bio-reference-operations
Generate consensus sequences and manage reference files using samtools. Create index for random access to reference sequ...
bio-crispr-screens-mageck-analysis
Reference examples tested with: MAGeCK 0.5+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+ Before using code patterns, verif...
bio-molecular-io
Reference examples tested with: RDKit 2024.03+ Before using code patterns, verify installed versions match. If versions ...
agentd-drug-discovery
description (10-20 chars): Hypothesis foundry keywords: ligand-design, SAR, ADMET, docking, ranking measurableoutcome: G...
bio-pathway-enrichment-visualization
Reference examples tested with: ggplot2 3.5+ Before using code patterns, verify installed versions match. If versions di...
bio-restriction-sites
from Bio import SeqIO from Bio.Restriction import EcoRI, BamHI, HindIII, RestrictionBatch, Analysis record = SeqIO.read(...
nicheformer-spatial-agent
The Nicheformer Spatial Agent leverages the Nicheformer foundation model, trained on over 53 million spatially resolved ...
tooluniverse-systems-biology
Comprehensive pathway and systems biology analysis integrating multiple curated databases to provide multi-dimensional v...