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14810 skills availabletreatment-plans
Treatment plan writing is the systematic documentation of clinical care strategies designed to address patient health co...
bio-methylation-methylkit
Reference examples tested with: Bismark 0.24+, methylKit 1.28+ Before using code patterns, verify installed versions mat...
mpn-progression-monitor-agent
The MPN Progression Monitor Agent provides comprehensive monitoring of myeloproliferative neoplasms (PV, ET, MF) for dis...
bio-epitranscriptomics-merip-preprocessing
STAR --runMode genomeGenerate \ --genomeDir starindex \ --genomeFastaFiles genome.fa \ --sjdbGTFfile genes.gtf for sampl...
drug-interaction-checker
This skill analyzes a list of medications to identify known interactions, focusing on safety and contraindications. Revi...
pdf-anthropic
This guide covers essential PDF processing operations using Python libraries and command-line tools. For advanced featur...
bio-genome-assembly-assembly-polishing
Improve assembly accuracy by correcting errors using additional sequencing data. | Tool | Input Reads | Best For | |----...
bio-fragment-analysis
Reference examples tested with: numpy 1.26+, pandas 2.2+, pysam 0.22+ Before using code patterns, verify installed versi...
bio-small-rna-seq-mirge3-analysis
miRge3.0 annotate \ -s sample1.fastq.gz,sample2.fastq.gz \ -lib miRge3libs \ -on human \ -db mirbase \ -o outputdir \ -a...
tooluniverse-rare-disease-diagnosis
Systematic diagnosis support for rare diseases using phenotype matching, gene panel prioritization, and variant interpre...
bio-longread-medaka
Reference examples tested with: bcftools 1.19+, minimap2 2.26+, samtools 1.19+ Before using code patterns, verify instal...
gtex-database
The Genotype-Tissue Expression (GTEx) project provides a comprehensive resource for studying tissue-specific gene expres...
chembl-database
ChEMBL is a manually curated database of bioactive molecules maintained by the European Bioinformatics Institute (EBI), ...
bio-causal-genomics-colocalization-analysis
Reference examples tested with: ggplot2 3.5+ Before using code patterns, verify installed versions match. If versions di...
bio-ribo-seq-ribosome-stalling
Reference examples tested with: BioPython 1.83+, numpy 1.26+, scipy 1.12+ Before using code patterns, verify installed v...
bio-single-cell-data-io
Reference examples tested with: Cell Ranger 8.0+, anndata 0.10+, numpy 1.26+, pandas 2.2+, scanpy 1.10+ Before using cod...
bio-genome-assembly-long-read-assembly
Assemble genomes from Oxford Nanopore (ONT) or PacBio long reads for highly contiguous assemblies. | Tool | Speed | Memo...
bayesian-optimizer
The Bayesian Optimizer allows agents to efficiently explore a parameter space to maximize a target metric (yield, purity...
torch-geometric
PyTorch Geometric is a library built on PyTorch for developing and training Graph Neural Networks (GNNs). Apply this ski...
bio-genome-engineering-base-editing-design
Reference examples tested with: BioPython 1.83+ Before using code patterns, verify installed versions match. If versions...
arxiv-search
Search the complete arXiv database of preprints across physics, mathematics, computer science, and quantitative biology ...
bio-bedgraph-handling
bedGraph is a text format for displaying continuous-valued data on genome browsers. Common for coverage, signal intensit...
bio-blast-searches
Run BLAST searches against NCBI databases using Biopython's Bio.Blast module. from Bio.Blast import NCBIWWW, NCBIXML fro...
research-grants
Research grant writing is the process of developing competitive funding proposals for federal agencies and foundations. ...