GitHub

flowio

FlowIO is a lightweight Python library for reading and writing Flow Cytometry Standard (FCS) files. Parse FCS metadata, ...

by K-Dense-AI

github

exploratory-data-analysis

Perform comprehensive exploratory data analysis (EDA) on scientific data files across multiple domains. This skill provi...

by K-Dense-AI

github

etetoolkit

ETE (Environment for Tree Exploration) is a toolkit for phylogenetic and hierarchical tree analysis. Manipulate trees, a...

by K-Dense-AI

github

esm

ESM provides state-of-the-art protein language models for understanding, generating, and designing proteins. This skill ...

by K-Dense-AI

github

dnanexus-integration

DNAnexus is a cloud platform for biomedical data analysis and genomics. Build and deploy apps/applets, manage data objec...

by K-Dense-AI

github

diffdock

DiffDock is a diffusion-based deep learning tool for molecular docking that predicts 3D binding poses of small molecule ...

by K-Dense-AI

github

dhdna-profiler

A structured system for extracting the cognitive fingerprint of any text's author. Based on the Digital Human DNA (DHDNA...

by K-Dense-AI

github

depmap

The Cancer Dependency Map (DepMap) project, run by the Broad Institute, systematically characterizes genetic dependencie...

by K-Dense-AI

github

deeptools

deepTools is a comprehensive suite of Python command-line tools designed for processing and analyzing high-throughput se...

by K-Dense-AI

github

deepchem

DeepChem is a comprehensive Python library for applying machine learning to chemistry, materials science, and biology. E...

by K-Dense-AI

github

datamol

Datamol is a Python library that provides a lightweight, Pythonic abstraction layer over RDKit for molecular cheminforma...

by K-Dense-AI

github

database-lookup

You have access to 78 public databases through their REST APIs. Your job is to figure out which database(s) are relevant...

by K-Dense-AI

github

dask

Dask is a Python library for parallel and distributed computing that enables three critical capabilities: Larger-than-me...

by K-Dense-AI

github

consciousness-council

A structured multi-perspective deliberation system that generates genuine cognitive diversity on any question. Instead o...

by K-Dense-AI

github

cobrapy

COBRApy is a Python library for constraint-based reconstruction and analysis (COBRA) of metabolic models, essential for ...

by K-Dense-AI

github

cirq

Cirq is Google Quantum AI's open-source framework for designing, simulating, and running quantum circuits on quantum com...

by K-Dense-AI

github

cellxgene-census

The CZ CELLxGENE Census provides programmatic access to a comprehensive, versioned collection of standardized single-cel...

by K-Dense-AI

github

bioservices

BioServices is a Python package providing programmatic access to approximately 40 bioinformatics web services and databa...

by K-Dense-AI

github

biopython

Biopython is a comprehensive set of freely available Python tools for biological computation. It provides functionality ...

by K-Dense-AI

github

bgpt-paper-search

BGPT is a remote MCP server that searches a curated database of scientific papers built from raw experimental data extra...

by K-Dense-AI

github

benchling-integration

Benchling is a cloud platform for life sciences R&D. Access registry entities (DNA, proteins), inventory, electronic lab...

by K-Dense-AI

github

astropy

Astropy is the core Python package for astronomy, providing essential functionality for astronomical research and data a...

by K-Dense-AI

github

arboreto

Arboreto is a computational library for inferring gene regulatory networks (GRNs) from gene expression data using parall...

by K-Dense-AI

github

anndata

AnnData is a Python package for handling annotated data matrices, storing experimental measurements (X) alongside observ...

by K-Dense-AI

github