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bio-write-sequences
Reference examples tested with: BioPython 1.83+, pysam 0.22+, samtools 1.19+ Before using code patterns, verify installed versions match. If versions ...
biomaster-workflows
Orchestrate BioMaster’s multi-agent pipelines (RNA-seq, ChIP-seq, single-cell, Hi-C) using the provided configs and repos to deliver reproducible outp...
biomcp-server
Deploy and operate the BioMCP server so MCP-compatible clients (Claude Desktop, LobeChat, etc.) can query biomedical databases via a single standardiz...
biomedical-data-analysis
Run the cross-language data analysis workflows (Python, R, SQL, Tableau/Power BI) described in this module to clean, analyze, and visualize biomedical...
biomni-research-agent
A general-purpose biomedical AI agent capable of executing complex research workflows using over 150 tools and databases. Biomni is a "General-Purpose...
biopython
Biopython is a comprehensive set of freely available Python tools for biological computation. It provides functionality for sequence manipulation, fil...
bioservices
BioServices is a Python package providing programmatic access to approximately 40 bioinformatics web services and databases. Retrieve biological data,...
boltz
| Requirement | Minimum | Recommended | |-------------|---------|-------------| | Python | 3.10+ | 3.11 | | CUDA | 12.0+ | 12.1+ | | GPU VRAM | 24GB |...
brainstorming
Help turn ideas into fully formed designs and specs through natural collaborative dialogue. Start by understanding the current project context, then a...
brenda-database
BRENDA (BRaunschweig ENzyme DAtabase) is the world's most comprehensive enzyme information system, containing detailed enzyme data from scientific lit...
bulk-combat-correction
Apply this skill when a user has multiple bulk expression matrices measured across different batches and needs to harmonise them before downstream ana...
bulk-deg-analysis
Follow this skill to run the end-to-end differential expression (DEG) workflow showcased in tdeg.ipynb. It assumes the user provides a raw gene-level ...