Search Skills
Search across 54932 indexed skills
modern-drug-rehab-computer
Comprehensive knowledge companion for individuals in addiction recovery, whether in residential treatment or commuting from home for outpatient progra...
monarch-database
The Monarch Initiative (https://monarchinitiative.org/) is a multi-species integrated knowledgebase that links genes, diseases, and phenotypes across ...
multi-search-engine
Integration of 17 search engines for web crawling without API keys. Baidu: https://www.baidu.com/s?wd={keyword} Bing CN: https://cn.bing.com/search?q=...
multimodal-medical-imaging
The Multimodal Medical Imaging Analysis Skill leverages state-of-the-art Vision-Language Models (VLMs) like Gemini 1.5 Pro and GPT-4o to interpret med...
bio-read-alignment-bwa-alignment
bwa-mem2 index reference.fa bwa-mem2 mem -t 8 reference.fa reads1.fq.gz reads2.fq.gz > aligned.sam bwa-mem2 mem -t 8 reference.fa reads.fq.gz > aligne...
bio-clip-seq-clip-alignment
STAR --runMode alignReads \ --genomeDir STARindex \ --readFilesIn trimmed.fq.gz \ --readFilesCommand zcat \ --outFilterMultimapNmax 1 \ --outFilterMis...
bio-spatial-transcriptomics-spatial-communication
Reference examples tested with: matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, squidpy 1.3+ Before using code patterns, verify installed ver...
bio-chipseq-super-enhancers
Reference examples tested with: GenomicRanges 1.54+, bedtools 2.31+, ggplot2 3.5+, samtools 1.19+ Before using code patterns, verify installed version...
ontology-validator
Validate that material sample annotations comply with ontology constraints: correct class names, valid properties, consistent domain/range relationshi...
clinical-interpretation
Prioritize and interpret variants for clinical significance using databases and ACMG/AMP guidelines. Annotated VCF ├── Database Lookup │ ├── ClinVar...
consensus-sequences
Apply variants to reference FASTA using bcftools consensus. bcftools consensus -f reference.fa input.vcf.gz > consensus.fa bcftools consensus -f refer...
deepvariant
docker pull google/deepvariant:1.6.1 docker pull google/deepvariant:1.6.1-gpu singularity pull docker://google/deepvariant:1.6.1 docker run -v "${PWD}...