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tooluniverse-target-research
Gather complete target intelligence by exploring 9 parallel research paths. Supports targets identified by gene symbol, UniProt accession, Ensembl ID,...
pan-cancer-multiomics-agent
The Pan-Cancer Multi-Omics Agent integrates multi-omics data across cancer types to identify shared oncogenic drivers, discover novel subtypes, and en...
data-visualization-expert
A dedicated skill for transforming raw data (CSV, JSON, Excel) into compelling visual narratives. Specializes in statistical and scientific plotting. ...
bio-genome-intervals-interval-arithmetic
Core set operations on genomic intervals using bedtools (CLI) and pybedtools (Python). bedtools intersect -a peaks.bed -b genes.bed > overlapping.bed ...
bio-metagenomics-amr-detection
Reference examples tested with: AMRFinderPlus 3.12+, pandas 2.2+ Before using code patterns, verify installed versions match. If versions differ: Pyth...
bio-workflows-neoantigen-pipeline
Complete workflow from somatic variants to ranked neoantigen vaccine candidates for personalized cancer immunotherapy. Somatic VCF (annotated) + Tumor...
bio-epitranscriptomics-m6a-differential
library(exomePeak2) design <- data.frame( condition = factor(c('ctrl', 'ctrl', 'treat', 'treat')) result <- exomePeak2( bamip = c('ctrlIP1.bam', 'ctrl...
post-processing
Analyze and extract meaningful information from simulation output data. Transform raw simulation output into actionable insights through field extract...
hmdb-database
The Human Metabolome Database (HMDB) is a comprehensive, freely available resource containing detailed information about small molecule metabolites fo...
bio-clinical-databases-variant-prioritization
Reference examples tested with: pandas 2.2+ Before using code patterns, verify installed versions match. If versions differ: Python: pip show <package...
bio-vcf-basics
Reference examples tested with: bcftools 1.19+, numpy 1.26+ Before using code patterns, verify installed versions match. If versions differ: Python: p...
ligandmpnn
| Requirement | Minimum | Recommended | |-------------|---------|-------------| | Python | 3.8+ | 3.10 | | CUDA | 11.0+ | 11.7+ | | GPU VRAM | 8GB | 1...