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arboreto
Arboreto is a computational library for inferring gene regulatory networks (GRNs) from gene expression data using parallelized algorithms that scale f...
armored-cart-design-agent
The Armored CAR-T Design Agent provides AI-assisted design of next-generation armored CAR-T cells engineered to express cytokines, chemokines, or othe...
autonomous-oncology-agent
This skill implements the capabilities of the "Autonomous Clinical AI Agent" described in Nature Cancer (2025). It combines Large Language Models (LLM...
bgpt-paper-search
BGPT is a remote MCP server that searches a curated database of scientific papers built from raw experimental data extracted from full-text studies. U...
bindcraft
| Requirement | Minimum | Recommended | |-------------|---------|-------------| | Python | 3.9+ | 3.10 | | CUDA | 11.7+ | 12.0+ | | GPU VRAM | 32GB | ...
binder-design
De novo binder design? ├─ Standard target → BoltzGen (recommended) │ All-atom output (no separate ProteinMPNN step needed) │ Better for ligand/sma...
bio-admet-prediction
Reference examples tested with: RDKit 2024.03+, pandas 2.2+ Before using code patterns, verify installed versions match. If versions differ: Python: p...
bio-alignment-files-bam-statistics
Generate alignment statistics using samtools and pysam. | Command | Output | Speed | |---------|--------|-------| | flagstat | Read counts by category...
bio-alignment-filtering
Filter alignments by flags, quality, and regions using samtools and pysam. | Option | Description | |--------|-------------| | -f FLAG | Include reads...
bio-alignment-indexing
Create indices for random access to alignment files using samtools and pysam. | Index | Extension | Use Case | |-------|-----------|----------| | BAI ...
bio-alignment-msa-statistics
Reference examples tested with: BioPython 1.83+, numpy 1.26+ Before using code patterns, verify installed versions match. If versions differ: Python: ...
bio-alignment-pairwise
Reference examples tested with: BioPython 1.83+ Before using code patterns, verify installed versions match. If versions differ: Python: pip show <pac...