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openalex-database
OpenAlex is a comprehensive open catalog of 240M+ scholarly works, authors, institutions, topics, sources, publishers, and funders. This skill provide...
scientific-brainstorming
Scientific brainstorming is a conversational process for generating novel research ideas. Act as a research ideation partner to generate hypotheses, e...
coagulation-thrombosis-agent
The Coagulation and Thrombosis Agent provides AI-driven analysis of hemostatic disorders, thrombosis risk assessment, and anticoagulation management. ...
data-viz-plots
This skill enables you to create professional scientific visualizations including scatter plots, line charts, heatmaps, violin plots, and more. Unlike...
bio-crispr-screens-batch-correction
Reference examples tested with: DESeq2 1.42+, MAGeCK 0.5+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scikit-learn 1.4+, scipy 1.12+ Before using code...
bio-entrez-search
Search NCBI databases using Biopython's Entrez module (ESearch, EInfo, EGQuery utilities). from Bio import Entrez Entrez.email = 'your.email@example.c...
gsea-enrichment
This skill covers gene set enrichment analysis (GSEA) and pathway enrichment workflows in OmicVerse. It provides critical guidance on the correct data...
protocolsio-integration
Protocols.io is a comprehensive platform for developing, sharing, and managing scientific protocols. This skill provides complete integration with the...
bio-crispr-screens-jacks-analysis
Reference examples tested with: MAGeCK 0.5+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scipy 1.12+ Before using code patterns, verify installed versi...
spatial-neighbors
Build spatial neighbor graphs for connectivity-based analyses. import squidpy as sq import scanpy as sc import numpy as np sq.gr.spatialneighbors(adat...
bio-single-cell-perturb-seq
Reference examples tested with: MAGeCK 0.5+, pandas 2.2+, pertpy 0.7+, scanpy 1.10+ Before using code patterns, verify installed versions match. If ve...
bio-hi-c-analysis-hic-visualization
Reference examples tested with: cooler 0.9+, cooltools 0.6+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+ Before using code patterns, verify installed ve...