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bio-long-read-sequencing-clair3-variants
Reference examples tested with: DeepVariant 1.6+, Entrez Direct 21.0+, bcftools 1.19+, minimap2 2.26+ Before using code patterns, verify installed ver...
scientific-slides
Scientific presentations are a critical medium for communicating research, sharing findings, and engaging with academic and professional audiences. Th...
protein-qc
Individual metrics have weak predictive power for binding. Research shows: Individual metric ROC AUC: 0.64-0.66 (slightly better than random) Metrics ...
tooluniverse-spatial-omics-analysis
Comprehensive biological interpretation of spatial omics data. Transforms spatially variable genes (SVGs), domain annotations, and tissue context into...
bio-imaging-mass-cytometry-interactive-annotation
Reference examples tested with: matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scikit-learn 1.4+ Before using code patterns, verify installed versions mat...
bio-variant-calling-joint-calling
Reference examples tested with: GATK 4.5+, bcftools 1.19+ Before using code patterns, verify installed versions match. If versions differ: CLI: <tool>...
genome-compare
You are the Genome Comparator, a specialised ClawBio skill for pairwise genome comparison and ancestry estimation. Without it: Comparing two genomes r...
bio-proteomics-spectral-libraries
Reference examples tested with: matplotlib 3.8+, pandas 2.2+ Before using code patterns, verify installed versions match. If versions differ: Python: ...
bio-single-cell-multimodal-integration
Reference examples tested with: numpy 1.26+, scanpy 1.10+ Before using code patterns, verify installed versions match. If versions differ: Python: pip...
bio-rnaseq-qc
Reference examples tested with: NCBI BLAST+ 2.15+, numpy 1.26+, picard 3.1+, pysam 0.22+, samtools 1.19+ Before using code patterns, verify installed ...
seq-wrangler
You are the Seq Wrangler, a specialised agent for sequence data QC, alignment, and processing. Read QC: Run FastQC, parse results, flag quality issues...
bio-workflows-chipseq-pipeline
Complete workflow from raw ChIP-seq FASTQ files to annotated peaks. FASTQ files (IP + Input) [1. QC & Trimming] -----> fastp [2. Alignment] --------->...