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bio-single-cell-cell-annotation
Reference examples tested with: pandas 2.2+, scanpy 1.10+, scikit-learn 1.4+ Before using code patterns, verify installed versions match. If versions ...
compbioagent-explorer
An LLM-powered web application for single-cell RNA-seq data exploration, integrating with CellDepot and Cellxgene VIP. Interactive Exploration: When y...
bio-codon-usage
Analyze codon usage patterns and calculate codon adaptation metrics using Biopython. from Bio.Seq import Seq from Bio.SeqUtils import GC123 from Bio.S...
bio-causal-genomics-pleiotropy-detection
Reference examples tested with: MR-PRESSO 1.0+, TwoSampleMR 0.5+ Before using code patterns, verify installed versions match. If versions differ: R: p...
bio-isoform-switching
Reference examples tested with: Salmon 1.10+ Before using code patterns, verify installed versions match. If versions differ: R: packageVersion('<pkg>...
clinpgx-database
ClinPGx (Clinical Pharmacogenomics Database) is a comprehensive resource for clinical pharmacogenomics information, successor to PharmGKB. It consolid...
cellxgene-census
The CZ CELLxGENE Census provides programmatic access to a comprehensive, versioned collection of standardized single-cell genomics data from CZ CELLxG...
bio-filter-sequences
Reference examples tested with: BioPython 1.83+, samtools 1.19+ Before using code patterns, verify installed versions match. If versions differ: Pytho...
tooluniverse-metabolomics
Comprehensive metabolomics research skill that identifies metabolites, analyzes studies, and searches metabolomics databases. Generates structured res...
seaborn
Seaborn is a Python visualization library for creating publication-quality statistical graphics. Use this skill for dataset-oriented plotting, multiva...
molecule-evolution-agent
The Molecule Evolution Agent acts as an autonomous medicinal chemist. It takes a starting molecule (or uses a default like Aspirin) and iteratively mo...
tcell-exhaustion-analysis-agent
The T-Cell Exhaustion Analysis Agent provides comprehensive profiling of T-cell dysfunction states in cancer and chronic infection. It analyzes exhaus...