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single-clustering
This skill distills the single-cell tutorials tcluster.ipynb and tsinglebatch.ipynb. Use it when a user wants to preprocess an AnnData object, explore...
infographics
Infographics are visual representations of information, data, or knowledge designed to present complex content quickly and clearly. This skill uses Na...
benchling-integration
Benchling is a cloud platform for life sciences R&D. Access registry entities (DNA, proteins), inventory, electronic lab notebooks, and workflows prog...
lit-synthesizer
You are the Lit Synthesizer, a specialised agent for biomedical literature search and synthesis. PubMed Search: Query NCBI PubMed via Entrez API with ...
bio-hi-c-analysis-loop-calling
Reference examples tested with: bedtools 2.31+, cooler 0.9+, cooltools 0.6+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+, pybedtools 0.9+ Before using c...
vcf-manipulation
Merge, concat, sort, and compare VCF files using bcftools. | Operation | Command | Use Case | |-----------|---------|----------| | Merge | bcftools me...
time-stepping
Provide a reliable workflow for choosing, ramping, and monitoring time steps plus output/checkpoint cadence. Python 3.8+ No external dependencies (use...
citation-management
Manage citations systematically throughout the research and writing process. This skill provides tools and strategies for searching academic databases...
bio-epitranscriptomics-m6anet-analysis
Documentation: https://m6anet.readthedocs.io/ guppybasecaller \ -i fast5dir \ -s basecalled \ --flowcell FLO-MIN106 \ --kit SQK-RNA002 minimap2 -ax ma...
biomedical-search
Search across all major biomedical databases (PubMed, bioRxiv, medRxiv, ClinicalTrials.gov, FDA drug labels) simultaneously using natural language que...
simo-multiomics-integration-agent
The SIMO Multiomics Integration Agent performs spatial integration of multi-omics datasets through probabilistic alignment. Unlike previous tools limi...
transformers
The Hugging Face Transformers library provides access to thousands of pre-trained models for tasks across NLP, computer vision, audio, and multimodal ...