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writing-plans
Write comprehensive implementation plans assuming the engineer has zero context for our codebase and questionable taste. Document everything they need...
bio-clip-seq-binding-site-annotation
library(ChIPseeker) library(TxDb.Hsapiens.UCSC.hg38.knownGene) txdb <- TxDb.Hsapiens.UCSC.hg38.knownGene peaks <- readPeakFile('peaks.bed') anno <- an...
bio-ribo-seq-translation-efficiency
Reference examples tested with: DESeq2 1.42+, numpy 1.26+, pandas 2.2+ Before using code patterns, verify installed versions match. If versions differ...
bio-fastq-quality
Reference examples tested with: BioPython 1.83+ Before using code patterns, verify installed versions match. If versions differ: Python: pip show <pac...
scientific-writing
This is the core skill for the deep research and writing tool—combining AI-driven deep research with well-formatted written outputs. Every document pr...
bio-data-visualization-genome-browser-tracks
[x-axis] where = top [bigwigcoverage] file = sample.bw title = Coverage height = 3 color = #4DBBD5 minvalue = 0 maxvalue = auto [spacer] height = 0.5 ...
dispatching-parallel-agents
When you have multiple unrelated failures (different test files, different subsystems, different bugs), investigating them sequentially wastes time. E...
fastq-analysis
OmicVerse provides a complete FASTQ-to-count-matrix pipeline via the ov.alignment module. This skill covers: SRA data acquisition: prefetch and fqdump...
occupational-health-analyzer
职业健康分析技能提供全面的职业健康数据分析功能，帮助用户追踪工作相关健康问题、识别职业健康风险、评估工作环境人机工程水平和优化职业健康。 主要功能模块： 职业健康风险评估 - 久坐、视屏终端、倒班工作、重复性劳损、工作压力等多维度风险评估 工作相关问题追踪 - 颈肩腰腿痛、眼疲劳、腕管综合征等症状监...
polars
Polars is a lightning-fast DataFrame library for Python and Rust built on Apache Arrow. Work with Polars' expression-based API, lazy evaluation framew...
interpro-database
InterPro (https://www.ebi.ac.uk/interpro/) is a comprehensive resource for protein family and domain classification maintained by EMBL-EBI. It integra...
bio-workflows-imc-pipeline
Raw MCD/TIFF Files ──> Image Processing ──> Cell Masks ┌─────────────────────────────────────────────┐ │ imc-pipeline │...