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bio-epidemiological-genomics-pathogen-typing
Reference examples tested with: mlst 2.23+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, scipy 1.12+ Before using code patterns, verify installed versions ...
scfoundation-model-agent
The scFoundation Model Agent provides a unified interface to leverage state-of-the-art single-cell foundation models for diverse downstream tasks. It ...
bio-longread-alignment
Reference examples tested with: minimap2 2.26+, samtools 1.19+ Before using code patterns, verify installed versions match. If versions differ: CLI: <...
ginkgo-cloud-lab
Ginkgo Cloud Lab (https://cloud.ginkgo.bio) provides remote access to Ginkgo Bioworks' autonomous lab infrastructure. Protocols are executed on Reconf...
bio-flow-cytometry-compensation-transformation
Reference examples tested with: flowCore 2.14+, scanpy 1.10+ Before using code patterns, verify installed versions match. If versions differ: R: packa...
clinical-decision-support
Generate professional clinical decision support (CDS) documents for pharmaceutical companies, clinical researchers, and medical decision-makers. This ...
tcm-constitution-analyzer
分析中医体质数据,识别体质类型,评估体质特征,并提供个性化养生改善建议。 基于《中医体质分类与判定》标准进行体质辨识。 评估维度: 9种体质类型评分(平和质、气虚质、阳虚质、阴虚质、痰湿质、湿热质、血瘀质、气郁质、特禀质) 主体质判定 兼夹体质识别 体质特征分析 评估方法: 60题标准化问卷 5分制...
knowledge-synthesis
The last mile of enterprise search. Takes raw results from multiple sources and produces a coherent, trustworthy answer. Transform this: chat result: ...
bio-read-qc-contamination-screening
Reference examples tested with: BBTools 39.0+, Bowtie2 2.5.3+, FastQ Screen 0.15+, FastQC 0.12+, MultiQC 1.21+ Before using code patterns, verify inst...
cellagent-annotation
Use CellTypeAgent to interpret marker genes, annotate scRNA-seq clusters, and coordinate multi-agent workflows for downstream analysis. Automated anno...
bio-comparative-genomics-positive-selection
''' dN/dS (omega, ω) interpretation: ω < 1: Purifying (negative) selection - deleterious mutations removed ω = 1: Neutral evolution - no selective pre...
cosmic-database
COSMIC (Catalogue of Somatic Mutations in Cancer) is the world's largest and most comprehensive database for exploring somatic mutations in human canc...