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bio-spatial-transcriptomics-spatial-domains
Reference examples tested with: matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, scikit-learn 1.4+, scipy 1.12+, squidpy 1.3+ Before using cod...
virtual-lab-agent
The Virtual Lab Agent orchestrates AI-powered virtual scientific research teams consisting of specialized agents (Principal Investigator, Immunologist...
bio-motif-search
Find patterns and motifs in biological sequences using Biopython and regex. from Bio.Seq import Seq from Bio import motifs import re seq = Seq('ATGCGA...
tooluniverse-drug-research
Comprehensive drug investigation using 50+ ToolUniverse tools across chemical databases, clinical trials, adverse events, pharmacogenomics, and litera...
bio-tcr-bcr-analysis-scirpy-analysis
Reference examples tested with: MiXCR 4.6+, VDJtools 1.2.1+, scanpy 1.10+ Before using code patterns, verify installed versions match. If versions dif...
variant-normalization
Left-align indels and split multiallelic sites using bcftools norm. The same variant can be represented multiple ways: chr1 100 ATCG A (right-...
drugbank-database
DrugBank is a comprehensive bioinformatics and cheminformatics database containing detailed information on drugs and drug targets. This skill enables ...
bio-genome-engineering-hdr-template-design
Reference examples tested with: BioPython 1.83+, primer3-py 2.0+ Before using code patterns, verify installed versions match. If versions differ: Pyth...
bio-virtual-screening
Reference examples tested with: AutoDock Vina 1.2+, RDKit 2024.03+, pandas 2.2+ Before using code patterns, verify installed versions match. If versio...
bio-tcr-bcr-analysis-mixcr-analysis
Reference examples tested with: MiXCR 4.6+, pandas 2.2+ Before using code patterns, verify installed versions match. If versions differ: Python: pip s...
bio-metabolomics-pathway-mapping
Reference examples tested with: ReactomePA 1.46+, clusterProfiler 4.10+ Before using code patterns, verify installed versions match. If versions diffe...
bio-splicing-qc
Reference examples tested with: matplotlib 3.8+, pandas 2.2+, pysam 0.22+ Before using code patterns, verify installed versions match. If versions dif...