Search Skills
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mpn-progression-monitor-agent
The MPN Progression Monitor Agent provides comprehensive monitoring of myeloproliferative neoplasms (PV, ET, MF) for disease progression, treatment re...
bio-methylation-methylkit
Reference examples tested with: Bismark 0.24+, methylKit 1.28+ Before using code patterns, verify installed versions match. If versions differ: R: pac...
treatment-plans
Treatment plan writing is the systematic documentation of clinical care strategies designed to address patient health conditions through evidence-base...
cart-design-optimizer-agent
The CAR-T Design Optimizer Agent provides end-to-end AI-guided design of chimeric antigen receptor T-cells. It integrates antigen prioritization, safe...
bio-workflows-multi-omics-pipeline
RNA-seq Data ─────┐ Proteomics Data ──┼──> Data Harmonization ──> Integration ──> Factors/Components │ ...
search-strategy
If you see unfamiliar placeholders or need to check which tools are connected, see CONNECTORS.md. The core intelligence behind enterprise search. Tran...
bio-sequence-slicing
Extract, slice, and concatenate sequences using Biopython's Seq objects. from Bio.Seq import Seq seq = Seq('ATGCGATCG') seq[0] # 'A' - first base...
bio-proteomics-proteomics-qc
Reference examples tested with: ggplot2 3.5+, limma 3.58+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scikit-learn 1.4+, scipy 1.12+, seaborn 0.13+ Be...
bio-rna-quantification-count-matrix-qc
Quality control and exploratory analysis of count matrices before differential expression. library(DESeq2) dds <- DESeqDataSetFromTximport(txi, colDat...
binding-characterization
| Factor | Choose SPR | Choose BLI | |--------|------------|------------| | Sensitivity | Small molecules, fragments (<500 Da) | Large complexes, anti...
bio-uniprot-access
Query UniProt for protein sequences, functional annotations, and cross-references. import requests def fetchuniprot(accession, format='fasta'): '''Fet...
bio-hi-c-analysis-matrix-operations
Reference examples tested with: cooler 0.9+, cooltools 0.6+, numpy 1.26+, pandas 2.2+, scipy 1.12+ Before using code patterns, verify installed versio...