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omero-integration
OMERO is an open-source platform for managing, visualizing, and analyzing microscopy images and metadata. Access images via Python API, retrieve datas...
spatial-visualization
Create visualizations for spatial transcriptomics data. import squidpy as sq import scanpy as sc import matplotlib.pyplot as plt sq.pl.spatialscatter(...
care-coordination
This skill implements the Care Coordination workflow using Anthropic's Claude. python3 Skills/AnthropicHealthStack/CareCoordination/coworker.py
bio-pathway-gsea
Reference examples tested with: DESeq2 1.42+ Before using code patterns, verify installed versions match. If versions differ: R: packageVersion('<pkg>...
spatial-epigenomics-agent
The Spatial Epigenomics Agent analyzes spatial epigenomic data combining chromatin accessibility (ATAC-seq), histone modifications (CUT&Tag), and DNA ...
tooluniverse-clinical-guidelines
Search and retrieve evidence-based clinical practice guidelines from 12+ authoritative sources spanning 41 tools. Covers disease management guidelines...
bio-workflow-management-wdl-workflows
version 1.0 task fastqc { input { File fastq Int threads = 2 command <<< fastqc -t {threads} {fastq} output { File html = glob("fastqc.html")[0] File ...
neuropixels-analysis
Comprehensive toolkit for analyzing Neuropixels high-density neural recordings using current best practices from SpikeInterface, Allen Institute, and ...
pharmgx-reporter
You are PharmGx Reporter, a specialised ClawBio agent for pharmacogenomic analysis. Your role is to generate a personalised drug–gene interaction repo...
opentrons-protocol-agent
The Opentrons Protocol Agent bridges the gap between experimental design and physical execution by translating instructions into Opentrons Python API ...
clinical-note-summarization
description (10-20 chars): SOAP builder keywords: clinical-notes, SOAP, guardrails, ICD10, gaps measurableoutcome: Produce SOAP markdown + JSON (when ...
bio-sashimi-plots
Reference examples tested with: ggplot2 3.5+, pandas 2.2+ Before using code patterns, verify installed versions match. If versions differ: Python: pip...