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bio-expression-matrix-sparse-handling
import numpy as np def checksparsity(counts): zeros = (counts == 0).sum().sum() total = counts.size sparsity = zeros / total print(f'Sparsity: {sparsi...
bio-phylo-distance-calculations
Compute distances from alignments and construct phylogenetic trees. from Bio import Phylo, AlignIO from Bio.Phylo.TreeConstruction import DistanceCalc...
bio-population-genetics-plink-basics
File formats, conversion, and quality control filtering with PLINK 1.9 and 2.0. | File | Contents | |------|----------| | .bed | Binary genotype data ...
pytdc
PyTDC is an open-science platform providing AI-ready datasets and benchmarks for drug discovery and development. Access curated datasets spanning the ...
bioinformatics-singlecell
import scanpy as sc import anndata as ad import scvi import muon as mu import pandas as pd import numpy as np import matplotlib.pyplot as plt import s...
bio-local-blast
Run BLAST searches locally using NCBI BLAST+ command-line tools. brew install blast sudo apt install ncbi-blast+ conda install -c bioconda blast blast...
clinical-reports
Clinical report writing is the process of documenting medical information with precision, accuracy, and compliance with regulatory standards. This ski...
chai
| Requirement | Minimum | Recommended | |-------------|---------|-------------| | Python | 3.10+ | 3.11 | | CUDA | 12.0+ | 12.1+ | | GPU VRAM | 24GB |...